Cyanobacteria achieve highly efficient photosynthesis using a CO
2
-concentrating mechanism relying on specialized Type I (NDH-1) complexes. Among these, NDH-1
3
and NDH-1
4
catalyze redox-coupled hydration of CO
2
to bicarbonate, supporting carbon fixation in carboxysomes. The mechanism of coupling electron transfer to CO
2
-hydration by these variant NDH-1 complexes remains unknown. We engineered a
Synechococcus
PCC7942 strain that expresses exclusively the high flux/low affinity NDH-1
4
complex, enabling the observation of the coupling of CO
2
hydration to cyclic electron flow in isolation from the other NDH-1 isoforms normally present in cells. We found that inhibition of the CupB protein by the carbonic anhydrase inhibitor ethoxzolamide (EZ) suppressed CO
2
uptake, slowed photosystem I rereduction, and abolished proton pumping as probed by acridine orange fluorescence. These effects were absent in strains lacking Cup proteins, confirming specificity. The results demonstrate that CO
2
hydration and electron transfer through NDH-1
4
are tightly coupled via proton translocation across the thylakoid membrane. These findings provide direct evidence for the bidirectional interaction in bioenergetic coupling between the plastoquinone reduction and the CO
2
uptake at the distal Zn-site over a span of ~150 Å and support a proton-removal hypothesis involving the proton transfer pathways from the Zn-site of CO
2
hydration to an energetically coupled proton loading site evolutionarily repurposed from the ancestral proton pumping mechanism to enable energetic CO
2
uptake.