Background:
Afatinib, an irreversible pan‐ERBB family inhibitor, has demonstrated promising efficacy in non‐small cell lung cancer (NSCLC) patients with uncommon
EGFR
activating mutations. However, besides the acquisition of the secondary T790M mutation, other resistance mechanisms to afatinib remain to be explored.
Materials and Methods:
This study retrospectively included 37 NSCLC patients harboring either
EGFR
or
ERBB2
activating mutations, who had received afatinib as first‐line treatment. Targeted next‐generation sequencing data on the baseline and post‐progression samples were subjected to analysis. Comparative analyses of clinical parameters and genomic features were performed.
Results:
Overall, the progression‐free survival of the
EGFR
‐mutated patients on first‐line afatinib was longer than that of the
ERBB2
‐positive patients (hazard ratio = 0.35 [95% confidence interval = 0.15–0.79],
p
= 0.008). Primary resistance was associated with the presence of exon 20 insertion mutation (
p
= 0.011), higher tumor mutational burden (
p
= 0.009), and higher proportion of APOBEC signature (
p
= 0.012), which were all enriched in the
ERBB2
‐mutated cohort. We further characterized acquired resistance to afatinib and discovered that baseline
EGFR
exon 19 deletions and higher levels of chromosomal instability and age‐related mutational signatures would contribute to the development of known resistance mechanisms such as
EGFR
T790M or
MET
amplification. We also report gaining
EGFR
activating mutations and losing
CDKN2A
,
NF1
, or the original
ERBB2
mutations as novel resistance mechanisms to afatinib for
ERBB2
‐mutated patients.
Conclusion:
The study identified multiple genomic characteristics associated with primary and secondary resistance to first‐line afatinib treatment in
EGFR
‐ and
ERBB2
‐positive subpopulations.