Achieving safe utilization of heavy metal-contaminated soils without compromising crop productivity represents a grand challenge for sustainable agriculture. Although foliar titanium (Ti) and soil organic fertilizers (OF) independently alleviate abiotic stress, it remains unclear whether and how aboveground Ti signaling coordinates with OF mediated rhizosphere processes to enhance crop productivity and restrict heavy metal accumulation through plant-metabolite-microbiome networks. Here, using Panax notoginseng as a model, the results showed that co-application of foliar Ti with soil OF significantly outperformed individual applications. This "top-down" strategy synergistically increased root biomass and saponin content (synergistic index > 1), while reducing root Cd and Pb concentrations by 46.60% and 47.23%, respectively. Mechanistically, soil OF established a functional rhizosphere foundation by enhancing nutrient bioavailability and enriching beneficial microbial taxa. Concurrently foliar Ti acted as a systemic trigger to reprogram plant metabolism, upregulating arginine and proline metabolic pathways in leaves and coinciding with enhanced diterpenoid biosynthesis in roots. Specifically, accumulated diterpenoids (forskolin and ingenol) functioned as selective semiochemicals, recruiting a specialized microbiome consortium with enhanced metal-resistant, growth-promoting, and nutrient-solubilizing bacteria (Sphingomonas, Rhodanobacter, Bacillus) and fungi (Penicillium, Aspergillus), while inhibiting the pathogen Ilyonectria. Consequently, this engineered rhizosphere microbiome may have contributed to rhizosphere-level Cd/Pb exclusion or immobilization, thereby decoupling root metal uptake from bulk soil metal pools. This study supports a novel "aboveground trigger-belowground support" framework in which Ti-induced metabolites promote the assembly of functional microbiomes that are further supported by OF. We propose a targeted biofortification strategy leveraging plant-metabolite-microbiome coordination for safe cultivation of crops.