Industrialization and urbanization in Northeast Asia have heightened PM2.5 pollution, posing significant public health risks. This study examined the spatial and chemical variability of polycyclic aromatic hydrocarbons (PAHs) and their ecotoxicity in winter PM2.5 from three capitals-Ulaanbaatar (UB, Mongolia), Beijing (BJ, China), and Seoul (SE, South Korea)-using two-dimensional gas chromatography time-of-flight mass spectrometry (GC×GC-TOF MS). PM2.5 samples collected between December 15, 2020 and January 14, 2021 revealed UB had the highest concentrations (85.7 ± 36.7 μg m-3) and PAH levels (758.9 ± 224.7 ng m-3), primarily from coal combustion and biomass burning. BJ (30.3 ± 16.9 μg m-3; 41.4 ± 18.4 ng m-3) and SE (26.0 ± 14.4 μg m-3; 6.2 ± 2.4 ng m-3) had lower PAH levels but a higher share of secondary products, including oxygenated (OPAHs) and nitrogen-containing PAHs (NPAHs). Overall, 646 PAH compounds were identified: UB was dominated by methylated alkyl and sulfur-containing PAHs, while BJ and SE had more hydroxylated and carbonylated PAHs. QSAR ecotoxicity analysis indicated the highest toxicity in SE from hydroxylated PAHs and a broader toxic range in UB. These findings support air quality strategies to reduce coal combustion in UB and secondary PAH formation in BJ and SE.