We present a noninvasive method of detecting substance concentration in the aqueous humor based on dual-wavelength iris imaging technology. Two light sources, one centered within (392 nm) and the other centered outside (850 nm) of an absorption band of Pirenoxine Sodium, a common type of drugs in eye disease treatment, were used for dual-wavelength iris imaging measurement. After passing through the aqueous humor twice, the back-scattering light was detected by a charge-coupled device (CCD). The detected images were then used to calculate the concentration of Pirenoxine Sodium. In eye model experiment, a resolution of 0.6525 ppm was achieved. Meanwhile, at least 4 ppm can be distinguished in in vivo experiment. These results demonstrated that our method can measure Pirenoxine Sodium concentration in the aqueous humor and its potential ability to monitor other materials' concentration in the aqueous humor.