Histone deacetylase 6 (HDAC6) has emerged as a promising therapeutic target in drug discovery. Aberrant expression of HDAC6 is associated with various diseases, including cancer, neurodegenerative disorders, and pathological autoimmune responses. Inhibition of HDAC6 has been extensively investigated for the treatment of multiple diseases, particularly cancer. A variety of HDAC6 inhibitors have been developed and are at different stages of drug development. Currently, diverse strategies targeting HDAC6 are being explored, such as isoform selective inhibitors, multi-targeted inhibitors and PROTACs. This review summarizes the functions of HDAC6, its roles in different disorders, and various types of modulators targeting HDAC6. These insights may provide valuable information for further design of therapeutic drugs by targeting HDAC6.