大数据挖掘和精准药物设计
本科生创新创业教育基地
黄遵楠课题组招新啦
一.基地负责人介绍
黄遵楠教授,海归博士、三级教授、博士生导师和博士后合作导师。现为广东医科大学研究生院副院长、东莞市计算机辅助药物设计重点实验室主任,附属东莞第一医院药学部的学术主任,以及广东省大数据挖掘和精准药物设计创新团队负责人。同时还兼任东莞市政协委员、农工党广东省委会联络工作委副主任、中国中医药信息学会中医临床药学分会副会长等,六个SCI期刊客座执行主编或学术编辑,JACS,Sci Adv,Nat Comm, Bioact Mater等60余个SCI期刊审稿人,中国科协海智计划特聘专家,国家自然科学基金项目评议专家、英国国家科研与创新署(UKRI)课题以及广东等省科技成果奖、杰出青年基金和特色人才计划评审专家等。2013年广东省“扬帆计划”引进紧缺拔尖人才,2016年东莞市优秀科技工作者,2023年东莞市特色人才,2025年中国商业联合会全国服务业科技创新人物。
主要从事大数据挖掘和精准药物设计的科研工作,在分子诊断标志物预测、靶向药物分子设计和中药复方的旧药新用等方面做出了原创性的工作。主持包括国家自然科学基金面上项目2项、外国专家项目2项以及省部级等科研课题9项,总经费达1000余万。发表学术论文170余篇,其中SCI论文136篇(其中高被引论文3篇),累计影响因子700余分,google上他引4700余次,H指数33,i10指数83;scopus上他引5200余次,H指数30。近五年,以第一或通讯作者(含共同)在Mol Cancer, Acta Pharm Sin B, Theranostics等高水平学术期刊上发表SCI论文68篇,累计影响因子380余分;主编SCI专刊3期;以主要起草人参与制定三项人工智能团体标准;获发明专项授权7项;获得广东省优秀教学成果奖二等奖2项(分别为第二完成人和第八完成人)和省级学会优秀教学成果奖共5项(其中第一完成人一等奖3项,三等奖1项;第三完成人一等奖1项)。
近两年指导三位博士后获得1项国家自然科学基金外国学者项目、2项粤莞联合基金青年创新项目及1项广东省教育厅青年创新项目。
二.基地成果
1.学生科研活动
已培养出博士生2名,同等学力1名,硕士生26名,本科生创新创业人才400余名。指导本科生获得创新创业项目国家级15项、省级16项,校级70余项以及省攀登计划6项,“挑战杯”广东省课外学术科技作品竞赛一等奖6项,二等奖3项,三等奖2项。
2015-2024年间,黄遵楠教授指导2014-2020级课题组成员本科生陈奇聪、刘旭、黄鸿斌、林树锽、汤斯琦,梁碧玉、刘弘、杜庆橙、张桂桂、陈镜安、刘家贺、姚斌、张敏婷、马钰坤、余漂健、陈伟钢、陈烁玲、周宇全、李朗辉、陈雯君、陈鑫琳、刘瑞凝、胡希韵、张旭婷、杨楠、廖科勇,史永鹏,李佳龙、刘雅琦、腾菲、廖剑波、唐裕来、洪晓玲、庄楷、胡希韵、冯海欣、梁友诚、黄宝翔、余嘉奇、王丽珊以(共同)第一或通讯作者在循证医学、分子进化、虚拟筛选、数据挖掘等生物信息学领域发表SCI论文31篇,累积影响因子达180余分,国际英文CSCD论文3篇,34篇论文他引已达到1175余次(本科生参与并有署名的SCI论文还有10余篇),另有多篇在评审中。教学科研成果受《人民日报》和《科技日报》等中央媒体报道。
课题组本科生每年均有多名学生升学至中山大学、华南理工大学、南方医科大学等知名高校。
2.本科生完成的主要成果
课题组近期部分科研成果和活动推文
1.课题组本科生2024年在中科院一区Top杂志Mol Cancer(IF=33.9)揭示SWI/SNF染色质重塑复合物泛癌景观和单细胞测序机制
2.课题组本科生2024年在中科院一区Top杂志Big Data Mining and Analytics揭示肾细胞癌mRNA和miRNA标志物
3. 课题组本科生2024年在中科院二区杂志Genes & Diseases(IF=9.4)揭示铜代谢基因作为胃腺癌全新的治疗靶点和免疫治疗指标
4.课题组本科生赴广州参加2024年第六届全国生物医学数据挖掘与计算学术会议
5.课题组本科生在2024年第15届生物信息学顶会ACM BCB年会做壁报展示
鼓励学生参加国内各类学术会议与竞赛以拓展学术视野
3.本科生完成的主要成果合集
1)Big Data Mining and Analytics, in press, (2026) (SCI IF: 6.2)
Lishan Wang#, Jiaojiao Wang#, Dongli Yang, Kai Zhuang, Jiazhuo Xiao, Zhuolun Tang, Muhammad Waqas, Lin Yan, Zunnan Huang*, “Unraveling the Oncogenic and Immunosuppressive Roles of the FACT Complex in Pan-Cancer Through Multi-Omics and Single-Cell Analysis
2)Interdisciplinary Sciences - Computational Life Sciences, in press, (2026) (SCI IF: 3.9
Kai Zhuang#, Lin Yan#, Muhammad Waqas, Haixin Feng, Siqi Tang, Haoqi He, Xinshi Yu, Yanling Wang*, Zunnan Huang*, “Unveiling the Impact of Copper Metabolism on Epithelial-Mesenchymal Transition of Triple-Negative Breast Cancer: Identification of Therapeutic Targets”
3)Journal of Cellular and Molecular Medicine (SCI IF: 4.2)
Aamir Fahira#, Kai Zhuang#, Xuemin Jian, Syed Mansoor Jan, Liu Yong, Jianbo Sun, Yongyong Shi*, Zunnan Huang*, “Genetic Crosstalk Between Type 1 Diabetes and Sjögren's Syndrome: A Systematic Exploration of Risk Genes and Common Pathways”,29(22): e70930 (2025)
4) Comput Struct Biotech J (SCI IF: 4.1, 他引2次)
Yulai Tang#, Aamir Fahira#, Siying Lin, Yiming Shao, Zunnan Huang*, Shared and specific competing endogenous RNAs network mining in four digestive system tumors, Computational and Structural Biotechnology Journal, 23, 4271-4287 (2024)
5) Big Data Min Anal (SCI IF: 6.2)
Jiaqi Yu1, Jiayi Cai1, Aamir Fahira, Keyong Liao, Yani Tongjia, Yiming Shao, Zunnan Huang*, “A Comprehensive Investigation to Identify Prognostic mRNA and miRNA Signatures for Renal Cell Utilizing a Stratification-based Approach”, Big Data Mining and Analytics, in press, doi: 10.26599/BDMA.2024.902003 (2024)
6) Mol Cancer (SCI IF: 33.9, 他引1次)
Kai Zhuang1, Lishan Wang1, Chengyu Lu1, Zhiping Liu1, Dongli Yang, Hao Zhong, Jiami Zou, Aamir Fahira, Jiaojiao Wang*, Zunnan Huang*, “Assessment of SWI/SNF Chromatin Remodeling Complex Related Genes as Potential Biomarkers and Therapeutic Targets in Pan-cancer”, Molecular Cancer, 23(1): 176 (2024)
7) BBA – Mol Cell Res (SCI IF: 4.6, 他引3次)
Yong Liu1, Junzhang Zhao1, Baoxiang Huang1, Youcheng Liang, Guanming Jiang, Xinglin Zhou, Yilin Chen, Tao He, Mingbin Zheng*, Zunnan Huang*, “Identification and validation of an immunotherapeutic signature for colon cancer based on the regulatory patterns of ferroptosis and their association with the tumor microenvironment”, Biochmica et Biophysica Acta - Molecular Cell Research, 20:119698 (2024)
8) Genes Dis (SCI IF=6.9)
Kai Zhuang1, Siqi Tang1, Haixin Feng1, Jinying Zhang, Ying Liu, Yong Liu, Yongjian Su, Jiaqi Yu, Zunnan Huang*, “A novel copper metabolism-related signature model predicting the prognosis, target drugs, and immunotherapy in stomach adenocarcinoma”, Genes & Diseases, 11(5): 101102 (2023)
9) Comput Biol Med (最新 SCI IF=7.7,他引12次)
Yong Liu1, Youcheng Liang1, Yongjian Su, Jiaqi Hu, Jianbo Sun, Mingbin Zheng*, Zunnan Huang*, “Exploring the potential mechanisms of Yi-Yi-Fu-Zi-Bai-Jiang-San therapy on the immune-inflamed phenotype of colorectal cancer via combined network pharmacology and bioinformatics analyses”, Computers in Biology and Medicine, accepted, (2023)
10) Comput Biol Med (最新 SCI IF=7.7, 他引11次)
Xiyun Hu1, Weidong Liu1, Meiqi He, Qimiao Qiu, Bingjie Zhou, Ruining Liu, Fengxu Wu*, Zunnan Huang*, “Comparison of the molecular mechanisms of Fuzi Lizhong Pill and Huangqin decoction in the treatment of cold and heat syndrome of ulcerative colitis based on network pharmacology”, Computers in Biology and Medicine, 159:106870 (2023)
11) Front Mol Biosci (IF=5.0, 他引2次)
Xiaoling Hong1, Kai Zhuang1, Na Xu, Jiang Wang, Yong Liu, Siqi Tang, Junzhang Zhao*, Zunnan Huang*, “An integrated analysis of prognostic mRNA signature in early- and progressive- stages gastric adenocarcinoma”, Frontiers in Molecular Bioscience, 9:1022056 (2022)
12) Int J Mol Sci (IF=5.6, 他引21)
Yulai Tang1, Hua Zhang1, Lingli Chen, Taomin Zhang, Na Xu, Zunnan Huang*, “Identification of Hypoxia-Related Prognostic Signature and Competing Endogenous RNA Regulatory Axes in Hepatocellular Carcinoma”, International Journal of Molecular Sciences, 23, 13590 (2022)
13) Molecules (IF=4.6, 他引73次)
Jianbo Liao1, Qinyu Wang1, Fengxu Wu*, Zunnan Huang*, “In Silico Methods for Identification of Potential Active Sites of the Therapeutic Targets”, Molecules, 27(20), 7103 (2022)
14) Mol Biol Rep (SCI IF=2.8, 他引5次)
Jiaen Wei1, Yaqi Liu1, Fei Teng1, Linshan Li, Shanhong Zhong, Hui Luo*, Zunnan Huang*, “Anticancer effects of marine compounds blocking the NF-κB signaling pathway”, Molecular Biology Reports, 49(10): 9975-9995 (2022)
15) Am J Cancer Res IF=5.3, 他引12次)
Siqi Tang1, Keyong Liao1, Yongpeng Shi1, Tingting Tang, Beibei Cui, Zunnan Huang*, “Bioinformatics Analysis of Potential Key lncRNA-miRNA-mRNA Molecules as Prognostic Markers and Important ceRNA Axes in Gastric Cancer”, American Journal of Cancer Research, 12(5), 2397-2418 (2022)
16) Curr Chin Sci (他引2次)
Jialong Li, Kun Li, Chang Gao, Zunnan Huang*, “An Epidemiological Study of Kidney Calculi in Western Guangdong”, Current Chinese Science, 2(1):68-75 (2022)
17) Interdiscipl Sci - Comput Life Sci ( IF=4.8, 他引78次)
Xuting Zhang1, Fengxu Wu1, Nan Yang1, Xiaohui Zhan, Jianbo Liao, Shangkang Mai, Zunnan Huang*, “In silico methods for identification of potential drug targets”, Interdisciplinary Sciences - Computational Life Sciences, 14(2):285-310 (2022) (中科院最新分区三区)
18) Front Oncol (IF=5.738, 他引24次)
Shuoling Chen1, Chang Gao1, Tianyang Yu1, Yueyang Qu, Gary Guishan Xiao*, Zunnan Huang*, “Bioinformatics analysis of a prognostic miRNA signature and potential key genes in pancreatic cancer”, Frontiers in Oncology, 11:641289 (2021)
19) Interdiscipl Sci - Comput Life Sci (IF=3.492, 他引7次)
Jingan Chen1, Silu Li1, Wenru Wu, Jingyi Xie, Xuemei Cheng, Zixin Ye, Xiaoqing Yin, Yong Liu*, Zunnan Huang*, “Molecular identification and phylogenetic analysis of the traditional Chinese medicinal plant Kochia scoparia using ITS2 barcoding”, Interdisciplinary Sciences - Computational Life Science, 13(1):128-139 (2021)
20) J Cancer Res Clin Oncol (IF=4.322, 他引52次)
Jiaen Wei1, Ruining Liu1, Xiyun Hu1, Tingen Liang, Zhiran Zhou, Zunnan Huang*, “Targeting the MAPK Signaling Pathway via Marine Compounds in Cancer Therapy”, Journal of Cancer Research and Clinical Oncology, 147: 3-22 (2021)
21) Gene (IF=3.688, 他引23次)
Wenjun Chen1, Xinlin Chen1, Minting Zhang, Zunnan Huang*, “The association of Human leukocyte antigen class II (HLA II) haplotypes with the risk of Latent autoimmune diabetes of adults (LADA): Evidence based on available data”, Gene, 27: 145177 (2020)
22) Front Chem (IF=5.221, 他引346次)
Fengxu Wu1, Yuquan Zhou1, Langhui Li1, Xianhuan Shen, Ganying Chen, Xiaoqing Wang, Xianyang Liang, Mengyuan Tan, Zunnan Huang*, “Computational approaches in preclinical studies on drug discovery and development”, Frontiers in Chemistry, 8: 726 (2020)
23) BMC Med Res Methodol (IF=4.615, 他引2次)
Shuhuang Lin, Yukun Ma, Zunnan Huang*, “Advanced Stratification Analyses in Molecular Association Meta-analysis: Methodology and Application”, BMC Medical Research Methodology, 20(1): 147 (2020) 方法学文章
24) Front Genet (IF=4.599, 他引55次)
Weigang Chen1, Chang Gao1, Yong Liu, Ying Wen, Xiaoling Hong, Zunnan Huang*, “Bioinformatics analysis of prognostic miRNAs and potential critical target genes in colon cancer”, Frontiers in Genetics, 11:478 (2020)
25) Front Pharmacol (IF=5.810, 他引37次)
Shuoling Chen1, Chang Gao1, Yangyuan Wu, Zunnan Huang*, “Identification of Prognostic miRNA Signature and Lymph Node Metastasis-related Key Genes in Cervical Cancer”, Frontiers in Pharmacology, 5:144 (2020)
26) Pharmacol Res (IF=7.658, 他引35次)
Yukun Ma1, Piaojian Yu1, Shuhuang Lin1, Qiqun Li, Zijing Fang, Zunnan Huang*, “The association between nonsteroidal anti-inflammatory drugs and skin cancer: Different responses in American and European populations”, Pharmacological Research, 152: 104499 (2020)
27) Genes (IF=3.759, 他引24次)
Minting Zhang1, Shuhuang Lin1, XiaolinYuang, Ziqi Lin, Zunnan Huang*,“HLA-DQB1 and HLA-DRB1 Variants Confer Susceptibility to Latent Autoimmune Diabetes in Adults: Relative Predispositional Effects Among Allele Groups”, Genes, 10(9): E710 (2019)
28) Cell Physiol Biochem (IF=5.500, 他引31次)
Siqi Tang1, Bin Yao1, Na Li, Shuhuang Lin*, Zunnan Huang*, “Association of dopamine beta-hydroxylase polymorphisms with Alzheimer’s disease, Parkinson’s disease and Schizophrenia: evidence based on currently available loci”, Cellular Physiology and Biochemistry, 51(1), 411-428 (2018)
29) Front Chem (IF=4.155, 他引155次)
Hongbin Huang1, Guigui Zhang1, Yuquan Zhou, Chenru Lin, Suling Chen, Yutong Lin, Shangkang Mai, Zunnan Huang*, Reverse screening methods to search for protein targets of chemopreventive compounds, Frontiers in Chemistry, 6: 138 (2018)(获第15届广东省挑战杯一等奖)
30) Oncotarget (IF=5.138, 他引7次)
Shuhuang Lin1, Xu Liu1, Bin Yao, Zunnan Huang*, Controlling for confounding factors and revealing their interactions in genetic association meta-analyses: a computing method and application for stratification analyses, Oncotarget, 9(15):12125-12316 (2018) 方法学文章(获得第15届广东省挑战杯二等奖)
31) J Theo Biol (IF=1.833, 他引4次)
Yong Liu1, Jingan Chen1, Jieying Qian, Hao Lin, Ning Sun, Zunnan Huang*, “Evolutionary analysis and structural characterization of Aquilaria sinensis sesquiterpene synthase in agarwood formation: a computational study”, Journal of Theoretical Biology, 456, 249-260 (2018)
32) Oncoscience (他引22次)
Qingcheng Du1, Guanming Jiang1, Silu Li, Yong Liu*, Zunnan Huang*, Docetaxel increases the risk of severe infections in the treatment of non-small cell lung cancer: a meta-analysis, Oncoscience, 5(7-8):220-238 (2018)
33) Sci Rep (IF=4.259, 他引36次)
Hong Liu1, Jian Huang1, Mengmeng Dou, Yong Liu1, Biying Xiao, Xu Liu*, Zunnan Huang*, “Variants in the IL7RA gene confer susceptibility to multiple sclerosis in Caucasians: evidence based on 9734 cases and 10436 controls”, Scientific Reports, 7(1):1207 (2017)(获得第14届广东省挑战杯二等奖)
34) Neurol Sci(IF=1.78, 他引39次)
Qicong Chen1, Biyu Liang1, Ziyou Wang, Xiaoguang Cheng, Yifeng Huang, Yong Liu*, Zunnan Huang*, Influence of four polymorphisms in ABCA1 and PTGS2 genes on risk of Alzheimer’s disease: a meta-analysis. Neurological Sciences, 37(8): 1209-20 (2016)
35) Medicine(IF=2.13, 他引24次)
Hongbin Huang1, Cong Peng1, Yong Liu, Xu Liu, Qicong Chen, Zunnan Huang*. Genetic association of NOS1 exon18, NOS1 exon29, ABCB1 1236C/T and ABCB1 3435C/T polymorphisms with the risk of Parkinson’s disease: a meta-analysis. Medicine, 95: e4982, (2016)(获得校级挑战杯二等奖)
36) Biomed Res Int (IF=2.13, 他引23次)
Yong Liu1, Qicong Chen1, Xu Liu, Mengmeng Dou, Silu Li, Jiahui Zhou, Hong Liu, Yongfu Wu*, Zunnan Huang*, Genetic association of CHAT rs3810950 and rs2177369 Polymorphisms with the risk of Alzheimer’s disease: a meta-analysis [J]. BioMed Research International, 2016: 9418163 (2016)
37) Meta Gene (他引17次)
Jiahe Liu1, Xu Liu1, Yong Liu, Shimin Deng, Hongbin Huang, Qicong Chen, Weidong Liu, Zunnan Huang*. Association of EVI5 rs11808092, CD58 rs2300747, and CIITA rs3087456 polymorphisms with multiple sclerosis risk: A meta-analysis [J].Meta Gene, 9:97-103 (2016)
三.基地研究方向
课题组聚焦运用医学大数据与智能算法破解疾病机制、加速药物发现。包含2个研究方向,临床大数据挖掘、计算机药物设计,课题组各个方向均由老师、海外博士后和研究生负责共同指导,欢迎热衷医学研究的同学加入。
1.临床大数据挖掘
致力于利用生物医学大数据和机器学习算法,深入分析疾病的发生机制,识别关键临床诊断标记物。通过构建多模态数据系统,提升疾病诊断的准确性,并挖掘潜在分子机制,为个性化治疗和新药研发提供支持。涵盖从数据挖掘,药物疗效预测到临床应用的多个环节,旨在推动精准医疗的发展,助力疾病诊疗的智能化和个性化进程。
2.计算机药物设计
利用计算化学基本原理,通过模拟预测与受体生物大分子之间的相互作用 或通过分析已有药物结构与活性内在关系,来辅助先导化合物的发现、设计和优化的药物设计方法。
四.科研活动目标
以掌握前沿医学技术为目标,通过深度参与课题设计、数据分析以及SCI论文的撰写,积极投身“大学生创新创业训练计划”、“攀登计划”、“挑战杯”等学术竞赛与项目申报,致力于形成方法创新与实际应用并重的科研成果,推动科研成果向临床转化,逐步成长为能够独立承担复杂系统医学研究任务的科研人才。
五.报名条件
1.招募对象:第二临床医学院、药学院、公共卫生学院、生物工程学院、医学技术学院、基础医学院2026级本科生优先。
2.学习成绩优秀,无重修记录。
3.未加入其他课题组。
4.有意向者把报名表与作业发至负责人邮箱:
全清龙 liqourleon@gmail.com
截止时间:10月30日18:00
4. 咨询群、报名表与作业获取(报名者务必进群,相关通知将在群里公布)
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内容来源:大数据挖掘和精准药物设计本科生创新创业教育基地