Abstract:Salt marshes of the northern Gulf of Mexico provide many ecosystem services, including supporting some of the USA’s most productive fisheries. Early work identified links between salt marsh area and commercial shrimp landings, while more recent research highlighted the importance of marsh edge. Many species appear to be restricted to the outer few meters of the vegetated marsh even when large areas are flooded for extended periods. We hypothesized that low dissolved oxygen (DO), driven by high respiration rates, may limit more extensive use of flooded marsh. To evaluate this, we continuously logged DO 5 cm above the substrate along transects at 10, 5, and 1 m into open water adjacent to the marsh edge and at 1, 5, and 10 m into the flooded marsh, for 48+ h periods at 10 sites in Mississippi Sound, AL, during the summer of 2024. DO levels 10 and 5 m into the flooded marsh regularly dropped to stressful levels (< 4 mg/L), often becoming hypoxic (< 2 mg/L) for periods of several hours. In addition to predictable diurnal DO cycles, we identified precipitous drops in DO on the flooded marsh surface around midday at some sites, coinciding with the beginning of the ebb tide. This suggests that even during bright sunny conditions, respiration can exceed aquatic photosynthesis in the shallow flooded marsh. Our findings suggest that much of the flooded marsh may be physiologically stressful for many aquatic species. Increasing temperatures and nutrient loads in our coastal waters will further exacerbate poor DO conditions and may degrade the suitability of this essential fish habitat.