Intercropping is vital for enhancing soil quality improvement and improving ecol. services.This study integrated the anal. of rhizosphere metabolites and microbial communities to elucidate the mechanism by which the long-term intercropping could regulate the soil rhizosphere microecol. and promote the faba bean growth.Two planting modes, faba bean single cropping and faba bean-wheat intercropping, along with the planting durations of 1 and 9 years, were established to investigate the wilt disease occurrence.The growth indicators, the soil phys. and chem. properties, the rhizosphere microbial communities, and the changes in rhizosphere metabolites of faba bean were measured.Continuous cropping can lead to poor soil conditions and high incidence of faba bean disease, while intercropping can alleviate the occurrence of diseases.Compared with monoculture for 1 yr, monoculture for 9 yr can promote the growth of faba bean by 12.89-29.19 %, reduce the incidence rate of fusarium wilt by 41.38 %, increase the proportion of large aggregates with R> 0.25 mm by 18.87 % by reducing the soil bulk d. by 6.67 %, average weight diameter 23.16 %, geometric mean diameter 26.51 %, maintaining soil pH stability and increasing soil organic matter by 30.74 % can improve soil structure, and the disease control effect is more significant.It is also possible to reduce the relative abundance of Fusarium by 8.93 % by improving the soil microbial community structure.In addition, metabolomics anal. also showed that long-term intercropping promotes the secretion of flavonoids and terpenoids in the rhizosphere soil of faba bean, enhancing their resistance.Through correlation anal., it was found that soil microbial activity is closely related to key metabolites in crop rhizosphere.The secretion and synthesis of flavonoids and terpenes can reduce the abundance of faba bean pathogens and alleviate their disease occurrence.The faba bean-wheat long-term intercropping improved the soil phys. and chem. properties, reconstructed the microbial community structure, and reduced the pathogenic bacteria abundance through rhizosphere metabolites, thereby maintaining soil quality improvement and promoting healthy faba bean growth.