Escitalopram (ETP) is a selective serotonin reuptake inhibitor anti-depressant drug that is reported to cause cardiac impairments. Melitidin (MLD) is a natural flavanone that exhibits marked biological and pharmacological properties. This study was commenced to explore the cardioprotective efficacy of MDL against ETP-induced cardiotoxicity. Thirty-two Sprague Dawley rats categorized into control, ETP (10 mg/kg), ETP (10 mg/kg) + MLD (23 mg/kg), and MLD (23 mg/kg) treated group. ETP exposure significantly (p < 0.05) upregulating the mRNA expressions of Mitochondrial fission 1 protein (FIS1), Mitochondrial fission factor (MFF), and dynamin-related protein 1 (Drp1) while inhibiting the expressions of Mitofusin-1 (MFN1), Mitofusin-2 (MFN2), and Optic atrophy 1 (OPA1). The catalytic activity of hemeoxygnase-1 (HO-1, -83%), glutathione peroxidase (GPx, -80%), superoxide dismutase (SOD, -79%), glutathione reductase (GSR, -85%), glutathione S-transferase (GST, -70%), and catalase (CAT, -65%) were substantially (p < 0.05) inhibited while the levels of reactive oxygen species (ROS, -1031%) and malondialdehyde (MDA, -1027%) were promoted remarkably (p < 0.05) following the administration of ETP. Besides, ETP intoxication reduced heart (-13%) coupled with thickness of posterior ((+ 38%) and septal wall (+ 29%) and enlargement of ventricular dimensions (+ 23%). A sharp escalation was observed in the levels of B-type natriuretic peptide (BNP, +238%), cyclooxygenase-2 (COX-2), lactate dehydrogenase (LDH, +509%), interleukin-1 beta (IL-1β), troponin-T, troponin I (+301%), interleukin-6 (IL-6), Pro-B-type natriuretic peptide (proBNP), Creatine phosphokinase (CPK), tumor necrosis factor- alpha (TNF-α, +845%), C-reactive protein, Creatine kinase-MB (CK-MB, +123%), and nuclear factor-kappa B (NF-κB, +642%) after ETP administration. Moreover, ETP exposure exerted adverse impacts on cardiac histology. Importantly, con-current administration of MLD alleviated cardiac toxicity via regulated mitochondrial dynamics, redox profile, echocardiographic alterations, cardiac injury markers, and histopathological impairments. Furthermore, in-silico analysis showed strong association of MLD with key regulatory mitochondrial dynamic genes. Our biochemical, radiological, histological, and in-silico findings showed that MLD confers cardio-protection against ETP-induced cardiotoxicity.